Desktop application v1.0.0 | September 2026
Download for Mac OS (Apple Silicon) | 284.4 MB Download User Guide Download Sample Files
Desktop application v1.0.0 | September 2026
Download for Mac OS (Apple Silicon) | 284.4 MB Download User Guide Download Sample Files
Desktop application v1.0.0 | September 2026
Download for Mac OS (Apple Silicon) | 284.4 MB Download User Guide Download Sample FilesAfter installation and upon opening the DMS Data Extraction Toolkit, please go to System Settings → Privacy & Security, scroll to Security, then click Open Anyway to allow the app to launch. This only needs to be done once.
DMS Extraction Toolkit extracts and formats field asymmetric (differential) ion mobility spectrometry (FAIMS/DMS) data from either JCamp (.jdx) or .mzML files to the input file format used by iDMS for parametric modelling and production of iDMS training datasets.
FAIMS/DMS data are generated using user-specific proprietary platforms with their own file formats. For example, experiments generated on a SCIEX® SelexIon instrument will produce .wiff and .wiffscan datafiles. To format these files for iDMS input, users must either manually generate their sample input files, or they can first convert their proprietary files to .jdx or .mzML files and then use the DMS Data Extraction Toolkit to batch extract their iDMS .csv input files.
Nguyen-Tran T*†, Shi XX†, Hashimoto-Roth E, Organ MG, Lavallee-Adam M, Perkins TJ, Bennett SAL* (2026), Intelligent differential ion mobility spectrometry (iDMS): A deep neural network that predicts optimal space-resolved ion mobility parameters for isomeric monoglycosphingolipids. bioRxiv:2026.2008.2026.747394.
† Joint first authors
* Joint corresponding authors
Nguyen-Tran T†, Hashimoto-Roth E†, Shi XX, Organ MG, Lavallée-Adam M, Perkins TJ, and Bennett SAL. (2026) Desktop iDMS: A stand-alone desktop version of the iDMS neural network that predicts optimal separation and compensation voltages for field asymmetric differential ion mobility spectrometry (FAIMS/DMS).
† Joint first authors
DMS Data Extraction Toolkit is free software. You can redistribute it and/or modify it under the terms of the GNU General Public License v3 (or later versions) as published by the Free Software Foundation. As per the GNU General Public License, DMS Data Extraction Toolkit is distributed as a bioinformatic lipidomic tool to assist users WITHOUT ANY WARRANTY and without any implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. All limitations of warranty are indicated in the GNU General Public License.